J6_8ANA_001

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8ANA|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ANA|1|a|G|45
8ANA|1|a|G|46
*
8ANA|1|a|C|179
8ANA|1|a|G|180
8ANA|1|a|A|181
8ANA|1|a|A|182
8ANA|1|a|C|183
*
8ANA|1|a|G|214
8ANA|1|a|G|215
8ANA|1|a|A|216
8ANA|1|a|A|217
8ANA|1|a|A|218
8ANA|1|a|A|219
8ANA|1|a|G|220
8ANA|1|a|A|221
8ANA|1|a|A|222
8ANA|1|a|A|223
8ANA|1|a|U|224
*
8ANA|1|a|A|231
8ANA|1|a|G|232
8ANA|1|a|A|233
8ANA|1|a|U|234
8ANA|1|a|U|235
*
8ANA|1|a|A|262
8ANA|1|a|G|263
8ANA|1|a|C|264
8ANA|1|a|A|265
8ANA|1|a|G|266
*
8ANA|1|a|C|426
8ANA|1|a|U|427
8ANA|1|a|A|428
8ANA|1|a|A|429
8ANA|1|a|A|430
8ANA|1|a|U|431
8ANA|1|a|A|432
8ANA|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34