J6_8B6C_003
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8B6C|1|5|G|3654, 8B6C|1|5|C|4083, 8B6C|1|5|A|4122, 8B6C|1|5|A|4124, 8B6C|1|5|A|4125
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B6C|1|5|U|3652
8B6C|1|5|U|3653
8B6C|1|5|G|3654
8B6C|1|5|A|3655
*
8B6C|1|5|U|3934
8B6C|1|5|U|3935
8B6C|1|5|U|3936
8B6C|1|5|G|3937
*
8B6C|1|5|C|3950
8B6C|1|5|A|3951
*
8B6C|1|5|U|3973
8B6C|1|5|G|3974
8B6C|1|5|U|3975
8B6C|1|5|C|3976
*
8B6C|1|5|G|4077
8B6C|1|5|C|4078
8B6C|1|5|C|4079
8B6C|1|5|U|4080
8B6C|1|5|C|4081
8B6C|1|5|A|4082
8B6C|1|5|C|4083
8B6C|1|5|G|4084
8B6C|1|5|A|4085
8B6C|1|5|U|4086
8B6C|1|5|C|4087
8B6C|1|5|C|4088
*
8B6C|1|5|OMG|4116
8B6C|1|5|G|4117
8B6C|1|5|U|4118
8B6C|1|5|G|4119
8B6C|1|5|U|4120
8B6C|1|5|C|4121
8B6C|1|5|A|4122
8B6C|1|5|G|4123
8B6C|1|5|A|4124
8B6C|1|5|A|4125
8B6C|1|5|A|4126
8B6C|1|5|A|4127
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: