J6_8B7Y_001

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8B7Y|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B7Y|1|I|G|45
8B7Y|1|I|G|46
*
8B7Y|1|I|C|179
8B7Y|1|I|G|180
8B7Y|1|I|A|181
8B7Y|1|I|A|182
8B7Y|1|I|C|183
*
8B7Y|1|I|G|214
8B7Y|1|I|G|215
8B7Y|1|I|A|216
8B7Y|1|I|A|217
8B7Y|1|I|A|218
8B7Y|1|I|A|219
8B7Y|1|I|G|220
8B7Y|1|I|A|221
8B7Y|1|I|A|222
8B7Y|1|I|A|223
8B7Y|1|I|U|224
*
8B7Y|1|I|A|231
8B7Y|1|I|G|232
8B7Y|1|I|A|233
8B7Y|1|I|U|234
8B7Y|1|I|U|235
*
8B7Y|1|I|A|262
8B7Y|1|I|G|263
8B7Y|1|I|C|264
8B7Y|1|I|A|265
8B7Y|1|I|G|266
*
8B7Y|1|I|C|426
8B7Y|1|I|U|427
8B7Y|1|I|A|428
8B7Y|1|I|A|429
8B7Y|1|I|A|430
8B7Y|1|I|U|431
8B7Y|1|I|A|432
8B7Y|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L34