J6_8BGE_001

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8BGE|1|0|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGE|1|0|G|45
8BGE|1|0|G|46
*
8BGE|1|0|C|179
8BGE|1|0|G|180
8BGE|1|0|A|181
8BGE|1|0|A|182
8BGE|1|0|C|183
*
8BGE|1|0|G|214
8BGE|1|0|G|215
8BGE|1|0|A|216
8BGE|1|0|A|217
8BGE|1|0|A|218
8BGE|1|0|A|219
8BGE|1|0|G|220
8BGE|1|0|A|221
8BGE|1|0|A|222
8BGE|1|0|A|223
8BGE|1|0|U|224
*
8BGE|1|0|A|231
8BGE|1|0|G|232
8BGE|1|0|A|233
8BGE|1|0|U|234
8BGE|1|0|U|235
*
8BGE|1|0|A|262
8BGE|1|0|G|263
8BGE|1|0|C|264
8BGE|1|0|A|265
8BGE|1|0|G|266
*
8BGE|1|0|C|426
8BGE|1|0|U|427
8BGE|1|0|A|428
8BGE|1|0|A|429
8BGE|1|0|A|430
8BGE|1|0|U|431
8BGE|1|0|A|432
8BGE|1|0|C|433

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34