J6_8BGH_003

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8BGH|1|0|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGH|1|0|G|45
8BGH|1|0|G|46
*
8BGH|1|0|C|179
8BGH|1|0|G|180
8BGH|1|0|A|181
8BGH|1|0|A|182
8BGH|1|0|C|183
*
8BGH|1|0|G|214
8BGH|1|0|G|215
8BGH|1|0|A|216
8BGH|1|0|A|217
8BGH|1|0|A|218
8BGH|1|0|A|219
8BGH|1|0|G|220
8BGH|1|0|A|221
8BGH|1|0|A|222
8BGH|1|0|A|223
8BGH|1|0|U|224
*
8BGH|1|0|A|231
8BGH|1|0|G|232
8BGH|1|0|A|233
8BGH|1|0|U|234
8BGH|1|0|U|235
*
8BGH|1|0|A|262
8BGH|1|0|G|263
8BGH|1|0|C|264
8BGH|1|0|A|265
8BGH|1|0|G|266
*
8BGH|1|0|C|426
8BGH|1|0|U|427
8BGH|1|0|A|428
8BGH|1|0|A|429
8BGH|1|0|A|430
8BGH|1|0|U|431
8BGH|1|0|A|432
8BGH|1|0|C|433

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34