3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
8BH4|1|0|U|2076, 8BH4|1|0|A|2388, 8BH4|1|0|U|2390, 8BH4|1|0|G|2428, 8BH4|1|0|A|2430, 8BH4|1|0|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BH4|1|0|U|2074
8BH4|1|0|U|2075
8BH4|1|0|U|2076
8BH4|1|0|A|2077
*
8BH4|1|0|U|2243
8BH4|1|0|U|2244
8BH4|1|0|U|2245
8BH4|1|0|G|2246
*
8BH4|1|0|C|2258
8BH4|1|0|U|2259
*
8BH4|1|0|A|2281
8BH4|1|0|G|2282
8BH4|1|0|C|2283
8BH4|1|0|A|2284
*
8BH4|1|0|U|2384
8BH4|1|0|C|2385
8BH4|1|0|A|2386
8BH4|1|0|U|2387
8BH4|1|0|A|2388
8BH4|1|0|G|2389
8BH4|1|0|U|2390
8BH4|1|0|G|2391
8BH4|1|0|A|2392
8BH4|1|0|U|2393
8BH4|1|0|C|2394
8BH4|1|0|C|2395
*
8BH4|1|0|G|2421
8BH4|1|0|C|2422
8BH4|1|0|U|2423
8BH4|1|0|C|2424
8BH4|1|0|A|2425
8BH4|1|0|A|2426
8BH4|1|0|C|2427
8BH4|1|0|G|2428
8BH4|1|0|G|2429
8BH4|1|0|A|2430
8BH4|1|0|U|2431
8BH4|1|0|A|2432
8BH4|1|0|A|2433
8BH4|1|0|A|2434
8BH4|1|0|A|2435

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2
Chain I
50S ribosomal protein L15
Chain T
50S ribosomal protein L27
Chain U
50S ribosomal protein L28
Chain b
50S ribosomal protein L33
Chain d
50S ribosomal protein L35

Coloring options:

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