J6_8BH4_003

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8BH4|1|0|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|0|G|45
8BH4|1|0|G|46
*
8BH4|1|0|C|179
8BH4|1|0|G|180
8BH4|1|0|A|181
8BH4|1|0|A|182
8BH4|1|0|C|183
*
8BH4|1|0|G|214
8BH4|1|0|G|215
8BH4|1|0|A|216
8BH4|1|0|A|217
8BH4|1|0|A|218
8BH4|1|0|A|219
8BH4|1|0|G|220
8BH4|1|0|A|221
8BH4|1|0|A|222
8BH4|1|0|A|223
8BH4|1|0|U|224
*
8BH4|1|0|A|231
8BH4|1|0|G|232
8BH4|1|0|A|233
8BH4|1|0|U|234
8BH4|1|0|U|235
*
8BH4|1|0|A|262
8BH4|1|0|G|263
8BH4|1|0|C|264
8BH4|1|0|A|265
8BH4|1|0|G|266
*
8BH4|1|0|C|426
8BH4|1|0|U|427
8BH4|1|0|A|428
8BH4|1|0|A|429
8BH4|1|0|A|430
8BH4|1|0|U|431
8BH4|1|0|A|432
8BH4|1|0|C|433

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34