J6_8BIM_001

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8BIM|1|0|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BIM|1|0|G|45
8BIM|1|0|G|46
*
8BIM|1|0|C|179
8BIM|1|0|G|180
8BIM|1|0|A|181
8BIM|1|0|A|182
8BIM|1|0|C|183
*
8BIM|1|0|G|214
8BIM|1|0|G|215
8BIM|1|0|A|216
8BIM|1|0|A|217
8BIM|1|0|A|218
8BIM|1|0|A|219
8BIM|1|0|G|220
8BIM|1|0|A|221
8BIM|1|0|A|222
8BIM|1|0|A|223
8BIM|1|0|U|224
*
8BIM|1|0|A|231
8BIM|1|0|G|232
8BIM|1|0|A|233
8BIM|1|0|U|234
8BIM|1|0|U|235
*
8BIM|1|0|A|262
8BIM|1|0|G|263
8BIM|1|0|C|264
8BIM|1|0|A|265
8BIM|1|0|G|266
*
8BIM|1|0|C|426
8BIM|1|0|U|427
8BIM|1|0|A|428
8BIM|1|0|A|429
8BIM|1|0|A|430
8BIM|1|0|U|431
8BIM|1|0|A|432
8BIM|1|0|C|433

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34