Loop J6_8BIM

3D structure

PDB id: 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.04 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 8BIM|1|0|U|2076, 8BIM|1|0|A|2388, 8BIM|1|0|U|2390, 8BIM|1|0|G|2428, 8BIM|1|0|A|2430, 8BIM|1|0|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8BIM|1|0|U|2074
8BIM|1|0|U|2075
8BIM|1|0|U|2076
8BIM|1|0|A|2077
*
8BIM|1|0|U|2243
8BIM|1|0|U|2244
8BIM|1|0|U|2245
8BIM|1|0|G|2246
*
8BIM|1|0|C|2258
8BIM|1|0|U|2259
*
8BIM|1|0|A|2281
8BIM|1|0|G|2282
8BIM|1|0|C|2283
8BIM|1|0|A|2284
*
8BIM|1|0|U|2384
8BIM|1|0|C|2385
8BIM|1|0|A|2386
8BIM|1|0|U|2387
8BIM|1|0|A|2388
8BIM|1|0|G|2389
8BIM|1|0|U|2390
8BIM|1|0|G|2391
8BIM|1|0|A|2392
8BIM|1|0|U|2393
8BIM|1|0|C|2394
8BIM|1|0|C|2395
*
8BIM|1|0|G|2421
8BIM|1|0|C|2422
8BIM|1|0|U|2423
8BIM|1|0|C|2424
8BIM|1|0|A|2425
8BIM|1|0|A|2426
8BIM|1|0|C|2427
8BIM|1|0|G|2428
8BIM|1|0|G|2429
8BIM|1|0|A|2430
8BIM|1|0|U|2431
8BIM|1|0|A|2432
8BIM|1|0|A|2433
8BIM|1|0|A|2434
8BIM|1|0|A|2435

Current chains

Chain 0: 23S rRNA RRLG-RRNA

Nearby chains

Chain A: 50S ribosomal protein L2
Chain I: 50S ribosomal protein L15
Chain T: 50S ribosomal protein L27
Chain U: 50S ribosomal protein L28
Chain b: 50S ribosomal protein L33
Chain d: 50S ribosomal protein L35

J6_8BIM_002