J6_8BJQ_001

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

8BJQ|1|1|A|67, 8BJQ|1|1|U|329, 8BJQ|1|C3|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BJQ|1|1|G|22
8BJQ|1|1|A|23
8BJQ|1|1|G|24
8BJQ|1|1|U|25
8BJQ|1|1|A|26
8BJQ|1|1|C|27
*
8BJQ|1|1|G|58
8BJQ|1|1|G|59
8BJQ|1|1|A|60
8BJQ|1|1|A|61
8BJQ|1|1|A|62
8BJQ|1|1|A|63
8BJQ|1|1|G|64
8BJQ|1|1|A|65
8BJQ|1|1|A|66
8BJQ|1|1|A|67
8BJQ|1|1|C|68
*
8BJQ|1|1|G|75
8BJQ|1|1|G|76
8BJQ|1|1|A|77
8BJQ|1|1|U|78
8BJQ|1|1|U|79
*
8BJQ|1|1|A|106
8BJQ|1|1|A|107
8BJQ|1|1|A|108
8BJQ|1|1|A|109
8BJQ|1|1|G|110
*
8BJQ|1|1|C|321
8BJQ|1|1|U|322
8BJQ|1|1|A|323
8BJQ|1|1|A|324
8BJQ|1|1|A|325
8BJQ|1|1|U|326
8BJQ|1|1|A|327
8BJQ|1|1|U|328
8BJQ|1|1|U|329
8BJQ|1|1|G|330
8BJQ|1|1|G|331
*
8BJQ|1|C3|C|32
8BJQ|1|C3|A|33
8BJQ|1|C3|U|34
8BJQ|1|C3|C|35

Current chains

Chain 1

25S rRNA

Chain C3

5.8S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LL

60S ribosomal protein L13-A

Chain LN

60S ribosomal protein L15-A

Chain Lh

60S ribosomal protein L35-A

Chain Li

60S ribosomal protein L36-A

Chain Lj

60S ribosomal protein L37-A