J6_8BN3_001
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8BN3|1|1|A|67, 8BN3|1|1|U|329, 8BN3|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BN3|1|1|G|22
8BN3|1|1|A|23
8BN3|1|1|G|24
8BN3|1|1|U|25
8BN3|1|1|A|26
8BN3|1|1|C|27
*
8BN3|1|1|G|58
8BN3|1|1|G|59
8BN3|1|1|A|60
8BN3|1|1|A|61
8BN3|1|1|A|62
8BN3|1|1|A|63
8BN3|1|1|G|64
8BN3|1|1|A|65
8BN3|1|1|A|66
8BN3|1|1|A|67
8BN3|1|1|C|68
*
8BN3|1|1|G|75
8BN3|1|1|G|76
8BN3|1|1|A|77
8BN3|1|1|U|78
8BN3|1|1|U|79
*
8BN3|1|1|A|106
8BN3|1|1|A|107
8BN3|1|1|A|108
8BN3|1|1|A|109
8BN3|1|1|G|110
*
8BN3|1|1|C|321
8BN3|1|1|U|322
8BN3|1|1|A|323
8BN3|1|1|A|324
8BN3|1|1|A|325
8BN3|1|1|U|326
8BN3|1|1|A|327
8BN3|1|1|U|328
8BN3|1|1|U|329
8BN3|1|1|G|330
8BN3|1|1|G|331
*
8BN3|1|4|C|32
8BN3|1|4|A|33
8BN3|1|4|U|34
8BN3|1|4|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- RPL4A isoform 1
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- Ribosomal protein L15
- Chain O5
- 60S ribosomal protein L35-A
- Chain O6
- 60S ribosomal protein L36-A
- Chain O7
- Large ribosomal subunit protein eL37A
Coloring options: