J6_8BPO_001

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC

Length

38 nucleotides

Bulged bases

8BPO|1|A1|A|66, 8BPO|1|C1|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|G|21
8BPO|1|A1|G|22
8BPO|1|A1|C|23
8BPO|1|A1|G|24
8BPO|1|A1|A|25
8BPO|1|A1|C|26
*
8BPO|1|A1|G|57
8BPO|1|A1|G|58
8BPO|1|A1|A|59
8BPO|1|A1|A|60
8BPO|1|A1|A|61
8BPO|1|A1|A|62
8BPO|1|A1|G|63
8BPO|1|A1|A|64
8BPO|1|A1|A|65
8BPO|1|A1|A|66
8BPO|1|A1|C|67
*
8BPO|1|A1|G|74
8BPO|1|A1|G|75
8BPO|1|A1|A|76
8BPO|1|A1|U|77
8BPO|1|A1|U|78
*
8BPO|1|A1|A|105
8BPO|1|A1|A|106
8BPO|1|A1|G|107
8BPO|1|A1|A|108
8BPO|1|A1|G|109
*
8BPO|1|A1|C|332
8BPO|1|A1|U|333
8BPO|1|A1|A|334
8BPO|1|A1|A|335
8BPO|1|A1|A|336
8BPO|1|A1|U|337
8BPO|1|A1|A|338
8BPO|1|A1|C|339
*
8BPO|1|C1|G|33
8BPO|1|C1|U|34
8BPO|1|C1|C|35

Current chains

Chain A1

28S ribosomal RNA

Chain C1

5.8S ribosomal RNA

Nearby chains

Chain K2

60S ribosomal protein L13

Chain M2

Ribosomal protein L15

Chain g2

60S ribosomal protein L35

Chain h2

60S ribosomal protein L36

Chain i2

Ribosomal protein L37