J6_8BPO_002
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 8BPO|1|A1|C|1501, 8BPO|1|A1|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|1352
8BPO|1|A1|G|1353
8BPO|1|A1|A|1354
8BPO|1|A1|G|1355
*
8BPO|1|A1|C|1384
8BPO|1|A1|G|1385
8BPO|1|A1|C|1386
8BPO|1|A1|A|1387
8BPO|1|A1|A|1388
*
8BPO|1|A1|U|1395
8BPO|1|A1|G|1396
8BPO|1|A1|A|1397
8BPO|1|A1|A|1398
8BPO|1|A1|G|1399
*
8BPO|1|A1|C|1418
8BPO|1|A1|G|1419
8BPO|1|A1|A|1420
8BPO|1|A1|G|1421
*
8BPO|1|A1|C|1464
8BPO|1|A1|G|1465
8BPO|1|A1|G|1466
*
8BPO|1|A1|C|1499
8BPO|1|A1|A|1500
8BPO|1|A1|C|1501
8BPO|1|A1|G|1502
8BPO|1|A1|A|1503
8BPO|1|A1|G|1504
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 60S ribosomal protein L4
- Chain K2
- 60S ribosomal protein L13
- Chain P2
- Ribosomal protein L18
- Chain Z2
- 60S ribosomal protein L27a
- Chain a2
- 60S ribosomal protein L29
- Chain h2
- 60S ribosomal protein L36
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