J6_8BRM_001
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGC*GGCGAC*GGAGGAGAAAC*GGAUU*AGGAG*CUAAAUAC
- Length
- 38 nucleotides
- Bulged bases
- 8BRM|1|LD|G|35, 8BRM|1|Lt|G|24, 8BRM|1|Lt|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BRM|1|LD|G|34
8BRM|1|LD|G|35
8BRM|1|LD|C|36
*
8BRM|1|Lt|G|21
8BRM|1|Lt|G|22
8BRM|1|Lt|C|23
8BRM|1|Lt|G|24
8BRM|1|Lt|A|25
8BRM|1|Lt|C|26
*
8BRM|1|Lt|G|57
8BRM|1|Lt|G|58
8BRM|1|Lt|A|59
8BRM|1|Lt|G|60
8BRM|1|Lt|G|61
8BRM|1|Lt|A|62
8BRM|1|Lt|G|63
8BRM|1|Lt|A|64
8BRM|1|Lt|A|65
8BRM|1|Lt|A|66
8BRM|1|Lt|C|67
*
8BRM|1|Lt|G|74
8BRM|1|Lt|G|75
8BRM|1|Lt|A|76
8BRM|1|Lt|U|77
8BRM|1|Lt|U|78
*
8BRM|1|Lt|A|104
8BRM|1|Lt|G|105
8BRM|1|Lt|G|106
8BRM|1|Lt|A|107
8BRM|1|Lt|G|108
*
8BRM|1|Lt|C|273
8BRM|1|Lt|U|274
8BRM|1|Lt|A|275
8BRM|1|Lt|A|276
8BRM|1|Lt|A|277
8BRM|1|Lt|U|278
8BRM|1|Lt|A|279
8BRM|1|Lt|C|280
Current chains
- Chain LD
- 5.8S rRNA
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LM
- Ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Li
- Ribosomal protein L29
- Chain Lj
- Ribosomal protein L36-1
- Chain Lk
- Ribosomal protein L37
Coloring options: