J6_8BRM_002

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUGA*UUCG*CG*CGUC*GCCUACCGAUCC*GGUGGCAGAAAA

Length

38 nucleotides

Bulged bases

8BRM|1|Lt|G|1906, 8BRM|1|Lt|A|2222, 8BRM|1|Lt|A|2224, 8BRM|1|Lt|A|2225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|U|1904
8BRM|1|Lt|U|1905
8BRM|1|Lt|G|1906
8BRM|1|Lt|A|1907
*
8BRM|1|Lt|U|2035
8BRM|1|Lt|U|2036
8BRM|1|Lt|C|2037
8BRM|1|Lt|G|2038
*
8BRM|1|Lt|C|2051
8BRM|1|Lt|G|2052
*
8BRM|1|Lt|C|2074
8BRM|1|Lt|G|2075
8BRM|1|Lt|U|2076
8BRM|1|Lt|C|2077
*
8BRM|1|Lt|G|2178
8BRM|1|Lt|C|2179
8BRM|1|Lt|C|2180
8BRM|1|Lt|U|2181
8BRM|1|Lt|A|2182
8BRM|1|Lt|C|2183
8BRM|1|Lt|C|2184
8BRM|1|Lt|G|2185
8BRM|1|Lt|A|2186
8BRM|1|Lt|U|2187
8BRM|1|Lt|C|2188
8BRM|1|Lt|C|2189
*
8BRM|1|Lt|G|2216
8BRM|1|Lt|G|2217
8BRM|1|Lt|U|2218
8BRM|1|Lt|G|2219
8BRM|1|Lt|G|2220
8BRM|1|Lt|C|2221
8BRM|1|Lt|A|2222
8BRM|1|Lt|G|2223
8BRM|1|Lt|A|2224
8BRM|1|Lt|A|2225
8BRM|1|Lt|A|2226
8BRM|1|Lt|A|2227

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LO

Ribosomal protein L15

Chain LR

Ribosomal protein L18

Chain LU

Ribosomal protein L21

Chain Lb

Ribosomal protein L27a

Chain Lp

Ribosomal protein L44