J6_8C8X_001

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8C8X|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8X|1|A|G|45
8C8X|1|A|G|46
*
8C8X|1|A|C|179
8C8X|1|A|G|180
8C8X|1|A|A|181
8C8X|1|A|A|182
8C8X|1|A|C|183
*
8C8X|1|A|G|214
8C8X|1|A|G|215
8C8X|1|A|A|216
8C8X|1|A|A|217
8C8X|1|A|A|218
8C8X|1|A|A|219
8C8X|1|A|G|220
8C8X|1|A|A|221
8C8X|1|A|A|222
8C8X|1|A|A|223
8C8X|1|A|U|224
*
8C8X|1|A|A|231
8C8X|1|A|G|232
8C8X|1|A|A|233
8C8X|1|A|U|234
8C8X|1|A|U|235
*
8C8X|1|A|A|262
8C8X|1|A|G|263
8C8X|1|A|C|264
8C8X|1|A|A|265
8C8X|1|A|G|266
*
8C8X|1|A|C|426
8C8X|1|A|U|427
8C8X|1|A|A|428
8C8X|1|A|A|429
8C8X|1|A|A|430
8C8X|1|A|U|431
8C8X|1|A|A|432
8C8X|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34