Loop J6_8C8X

3D structure

PDB id: 8C8X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM captures early ribosome assembly in action
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.93 Å

Loop

Sequence: CUUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAAG
Length: 43 nucleotides
Bulged bases: 8C8X|1|A|U|2076, 8C8X|1|A|G|2428, 8C8X|1|A|A|2430, 8C8X|1|A|U|2431, 8C8X|1|A|A|2432, 8C8X|1|A|A|2433, 8C8X|1|A|A|2434
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8C8X|1|A|C|2073
8C8X|1|A|U|2074
8C8X|1|A|U|2075
8C8X|1|A|U|2076
8C8X|1|A|A|2077
*
8C8X|1|A|U|2243
8C8X|1|A|U|2244
8C8X|1|A|U|2245
8C8X|1|A|G|2246
*
8C8X|1|A|C|2258
8C8X|1|A|U|2259
*
8C8X|1|A|A|2281
8C8X|1|A|G|2282
8C8X|1|A|C|2283
8C8X|1|A|A|2284
*
8C8X|1|A|U|2384
8C8X|1|A|C|2385
8C8X|1|A|A|2386
8C8X|1|A|U|2387
8C8X|1|A|A|2388
8C8X|1|A|G|2389
8C8X|1|A|U|2390
8C8X|1|A|G|2391
8C8X|1|A|A|2392
8C8X|1|A|U|2393
8C8X|1|A|C|2394
8C8X|1|A|C|2395
*
8C8X|1|A|G|2421
8C8X|1|A|C|2422
8C8X|1|A|U|2423
8C8X|1|A|C|2424
8C8X|1|A|A|2425
8C8X|1|A|A|2426
8C8X|1|A|C|2427
8C8X|1|A|G|2428
8C8X|1|A|G|2429
8C8X|1|A|A|2430
8C8X|1|A|U|2431
8C8X|1|A|A|2432
8C8X|1|A|A|2433
8C8X|1|A|A|2434
8C8X|1|A|A|2435
8C8X|1|A|G|2436

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 1: 50S ribosomal protein L33
Chain 3: 50S ribosomal protein L35
Chain L: 50S ribosomal protein L15
Chain W: 50S ribosomal protein L27
Chain X: 50S ribosomal protein L28

J6_8C8X_002