J6_8C8Y_001

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8C8Y|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Y|1|A|G|45
8C8Y|1|A|G|46
*
8C8Y|1|A|C|179
8C8Y|1|A|G|180
8C8Y|1|A|A|181
8C8Y|1|A|A|182
8C8Y|1|A|C|183
*
8C8Y|1|A|G|214
8C8Y|1|A|G|215
8C8Y|1|A|A|216
8C8Y|1|A|A|217
8C8Y|1|A|A|218
8C8Y|1|A|A|219
8C8Y|1|A|G|220
8C8Y|1|A|A|221
8C8Y|1|A|A|222
8C8Y|1|A|A|223
8C8Y|1|A|U|224
*
8C8Y|1|A|A|231
8C8Y|1|A|G|232
8C8Y|1|A|A|233
8C8Y|1|A|U|234
8C8Y|1|A|U|235
*
8C8Y|1|A|A|262
8C8Y|1|A|G|263
8C8Y|1|A|C|264
8C8Y|1|A|A|265
8C8Y|1|A|G|266
*
8C8Y|1|A|C|426
8C8Y|1|A|U|427
8C8Y|1|A|A|428
8C8Y|1|A|A|429
8C8Y|1|A|A|430
8C8Y|1|A|U|431
8C8Y|1|A|A|432
8C8Y|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34