J6_8C90_002

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAGC*GCUAAAUAC

Length

38 nucleotides

Bulged bases

8C90|1|A|A|223, 8C90|1|A|A|428, 8C90|1|A|A|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C90|1|A|G|45
8C90|1|A|G|46
*
8C90|1|A|C|179
8C90|1|A|G|180
8C90|1|A|A|181
8C90|1|A|A|182
8C90|1|A|C|183
*
8C90|1|A|G|214
8C90|1|A|G|215
8C90|1|A|A|216
8C90|1|A|A|217
8C90|1|A|A|218
8C90|1|A|A|219
8C90|1|A|G|220
8C90|1|A|A|221
8C90|1|A|A|222
8C90|1|A|A|223
8C90|1|A|U|224
*
8C90|1|A|A|231
8C90|1|A|G|232
8C90|1|A|A|233
8C90|1|A|U|234
8C90|1|A|U|235
*
8C90|1|A|A|262
8C90|1|A|G|263
8C90|1|A|C|264
8C90|1|A|A|265
8C90|1|A|G|266
8C90|1|A|C|267
*
8C90|1|A|G|425
8C90|1|A|C|426
8C90|1|A|U|427
8C90|1|A|A|428
8C90|1|A|A|429
8C90|1|A|A|430
8C90|1|A|U|431
8C90|1|A|A|432
8C90|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34