J6_8C92_001

3D structure

PDB id

8C92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GG*CGAAC*GAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

35 nucleotides

Bulged bases

8C92|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C92|1|A|G|45
8C92|1|A|G|46
*
8C92|1|A|C|179
8C92|1|A|G|180
8C92|1|A|A|181
8C92|1|A|A|182
8C92|1|A|C|183
*
8C92|1|A|G|215
8C92|1|A|A|216
8C92|1|A|A|217
8C92|1|A|A|218
8C92|1|A|A|219
8C92|1|A|G|220
8C92|1|A|A|221
8C92|1|A|A|222
8C92|1|A|A|223
8C92|1|A|U|224
*
8C92|1|A|A|231
8C92|1|A|G|232
8C92|1|A|A|233
8C92|1|A|U|234
8C92|1|A|U|235
*
8C92|1|A|A|262
8C92|1|A|G|263
8C92|1|A|C|264
8C92|1|A|A|265
8C92|1|A|G|266
*
8C92|1|A|C|426
8C92|1|A|U|427
8C92|1|A|A|428
8C92|1|A|A|429
8C92|1|A|A|430
8C92|1|A|U|431
8C92|1|A|A|432
8C92|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34