J6_8C99_001

3D structure

PDB id

8C99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUUC*GAGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

8C99|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C99|1|A|G|45
8C99|1|A|G|46
*
8C99|1|A|C|179
8C99|1|A|G|180
8C99|1|A|A|181
8C99|1|A|A|182
8C99|1|A|C|183
*
8C99|1|A|G|214
8C99|1|A|G|215
8C99|1|A|A|216
8C99|1|A|A|217
8C99|1|A|A|218
8C99|1|A|A|219
8C99|1|A|G|220
8C99|1|A|A|221
8C99|1|A|A|222
8C99|1|A|A|223
8C99|1|A|U|224
*
8C99|1|A|A|231
8C99|1|A|G|232
8C99|1|A|A|233
8C99|1|A|U|234
8C99|1|A|U|235
8C99|1|A|C|236
*
8C99|1|A|G|261
8C99|1|A|A|262
8C99|1|A|G|263
8C99|1|A|C|264
8C99|1|A|A|265
8C99|1|A|G|266
*
8C99|1|A|C|426
8C99|1|A|U|427
8C99|1|A|A|428
8C99|1|A|A|429
8C99|1|A|A|430
8C99|1|A|U|431
8C99|1|A|A|432
8C99|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34