J6_8CDR_002
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UGUC*GCCUAUCGAUCC*(OMG)GUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8CDR|1|AA|G|2418, 8CDR|1|AA|C|2760, 8CDR|1|AA|A|2799, 8CDR|1|AA|A|2801, 8CDR|1|AA|A|2802
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CDR|1|AA|U|2416
8CDR|1|AA|OMU|2417
8CDR|1|AA|G|2418
8CDR|1|AA|A|2419
*
8CDR|1|AA|U|2611
8CDR|1|AA|U|2612
8CDR|1|AA|U|2613
8CDR|1|AA|G|2614
*
8CDR|1|AA|C|2627
8CDR|1|AA|A|2628
*
8CDR|1|AA|U|2650
8CDR|1|AA|G|2651
8CDR|1|AA|U|2652
8CDR|1|AA|C|2653
*
8CDR|1|AA|G|2754
8CDR|1|AA|C|2755
8CDR|1|AA|C|2756
8CDR|1|AA|U|2757
8CDR|1|AA|A|2758
8CDR|1|AA|U|2759
8CDR|1|AA|C|2760
8CDR|1|AA|G|2761
8CDR|1|AA|A|2762
8CDR|1|AA|U|2763
8CDR|1|AA|C|2764
8CDR|1|AA|C|2765
*
8CDR|1|AA|OMG|2793
8CDR|1|AA|G|2794
8CDR|1|AA|U|2795
8CDR|1|AA|G|2796
8CDR|1|AA|C|2797
8CDR|1|AA|C|2798
8CDR|1|AA|A|2799
8CDR|1|AA|G|2800
8CDR|1|AA|A|2801
8CDR|1|AA|A|2802
8CDR|1|AA|A|2803
8CDR|1|AA|A|2804
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain Cc
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain F
- 60S ribosomal protein L21-A
- Chain M
- 60S ribosomal protein L28
- Chain N
- 60S ribosomal protein L29
- Chain QQ
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L42-A
Coloring options: