J6_8CF5_001
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8CF5|1|AA|A|67, 8CF5|1|AA|U|329, 8CF5|1|CC|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CF5|1|AA|G|22
8CF5|1|AA|A|23
8CF5|1|AA|G|24
8CF5|1|AA|U|25
8CF5|1|AA|A|26
8CF5|1|AA|C|27
*
8CF5|1|AA|G|58
8CF5|1|AA|G|59
8CF5|1|AA|A|60
8CF5|1|AA|A|61
8CF5|1|AA|A|62
8CF5|1|AA|A|63
8CF5|1|AA|G|64
8CF5|1|AA|A|65
8CF5|1|AA|A|66
8CF5|1|AA|A|67
8CF5|1|AA|C|68
*
8CF5|1|AA|G|75
8CF5|1|AA|G|76
8CF5|1|AA|A|77
8CF5|1|AA|U|78
8CF5|1|AA|U|79
*
8CF5|1|AA|A|106
8CF5|1|AA|A|107
8CF5|1|AA|A|108
8CF5|1|AA|A|109
8CF5|1|AA|G|110
*
8CF5|1|AA|C|321
8CF5|1|AA|U|322
8CF5|1|AA|A|323
8CF5|1|AA|A|324
8CF5|1|AA|A|325
8CF5|1|AA|U|326
8CF5|1|AA|A|327
8CF5|1|AA|U|328
8CF5|1|AA|U|329
8CF5|1|AA|G|330
8CF5|1|AA|G|331
*
8CF5|1|CC|C|32
8CF5|1|CC|A|33
8CF5|1|CC|U|34
8CF5|1|CC|C|35
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain T
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L36-A
- Chain V
- 60S ribosomal protein L37-A
Coloring options: