J6_8CGD_001

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8CGD|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGD|1|a|G|45
8CGD|1|a|G|46
*
8CGD|1|a|C|179
8CGD|1|a|G|180
8CGD|1|a|A|181
8CGD|1|a|A|182
8CGD|1|a|C|183
*
8CGD|1|a|G|214
8CGD|1|a|G|215
8CGD|1|a|A|216
8CGD|1|a|A|217
8CGD|1|a|A|218
8CGD|1|a|A|219
8CGD|1|a|G|220
8CGD|1|a|A|221
8CGD|1|a|A|222
8CGD|1|a|A|223
8CGD|1|a|U|224
*
8CGD|1|a|A|231
8CGD|1|a|G|232
8CGD|1|a|A|233
8CGD|1|a|U|234
8CGD|1|a|U|235
*
8CGD|1|a|A|262
8CGD|1|a|G|263
8CGD|1|a|C|264
8CGD|1|a|A|265
8CGD|1|a|G|266
*
8CGD|1|a|C|426
8CGD|1|a|U|427
8CGD|1|a|A|428
8CGD|1|a|A|429
8CGD|1|a|A|430
8CGD|1|a|U|431
8CGD|1|a|A|432
8CGD|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34