J6_8CGK_001

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8CGK|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CGK|1|a|G|45
8CGK|1|a|G|46
*
8CGK|1|a|C|179
8CGK|1|a|G|180
8CGK|1|a|A|181
8CGK|1|a|A|182
8CGK|1|a|C|183
*
8CGK|1|a|G|214
8CGK|1|a|G|215
8CGK|1|a|A|216
8CGK|1|a|A|217
8CGK|1|a|A|218
8CGK|1|a|A|219
8CGK|1|a|G|220
8CGK|1|a|A|221
8CGK|1|a|A|222
8CGK|1|a|A|223
8CGK|1|a|U|224
*
8CGK|1|a|A|231
8CGK|1|a|G|232
8CGK|1|a|A|233
8CGK|1|a|U|234
8CGK|1|a|U|235
*
8CGK|1|a|A|262
8CGK|1|a|G|263
8CGK|1|a|C|264
8CGK|1|a|A|265
8CGK|1|a|G|266
*
8CGK|1|a|C|426
8CGK|1|a|U|427
8CGK|1|a|A|428
8CGK|1|a|A|429
8CGK|1|a|A|430
8CGK|1|a|U|431
8CGK|1|a|A|432
8CGK|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34