J6_8CVJ_003

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8CVJ|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVJ|1|2A|G|44
8CVJ|1|2A|C|45
*
8CVJ|1|2A|G|179
8CVJ|1|2A|G|180
8CVJ|1|2A|A|181
8CVJ|1|2A|A|182
8CVJ|1|2A|C|183
*
8CVJ|1|2A|G|214
8CVJ|1|2A|G|215
8CVJ|1|2A|A|216
8CVJ|1|2A|G|217
8CVJ|1|2A|A|218
8CVJ|1|2A|G|219
8CVJ|1|2A|G|220
8CVJ|1|2A|A|221
8CVJ|1|2A|A|222
8CVJ|1|2A|A|223
8CVJ|1|2A|G|224
*
8CVJ|1|2A|C|231
8CVJ|1|2A|G|232
8CVJ|1|2A|A|233
8CVJ|1|2A|C|234
8CVJ|1|2A|U|235
*
8CVJ|1|2A|A|262
8CVJ|1|2A|C|263
8CVJ|1|2A|C|264
8CVJ|1|2A|A|265
8CVJ|1|2A|G|266
*
8CVJ|1|2A|C|426
8CVJ|1|2A|U|427
8CVJ|1|2A|A|428
8CVJ|1|2A|A|429
8CVJ|1|2A|G|430
8CVJ|1|2A|U|431
8CVJ|1|2A|A|432
8CVJ|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34