J6_8CVK_003

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8CVK|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVK|1|2A|G|44
8CVK|1|2A|C|45
*
8CVK|1|2A|G|179
8CVK|1|2A|G|180
8CVK|1|2A|A|181
8CVK|1|2A|A|182
8CVK|1|2A|C|183
*
8CVK|1|2A|G|214
8CVK|1|2A|G|215
8CVK|1|2A|A|216
8CVK|1|2A|G|217
8CVK|1|2A|A|218
8CVK|1|2A|G|219
8CVK|1|2A|G|220
8CVK|1|2A|A|221
8CVK|1|2A|A|222
8CVK|1|2A|A|223
8CVK|1|2A|G|224
*
8CVK|1|2A|C|231
8CVK|1|2A|G|232
8CVK|1|2A|A|233
8CVK|1|2A|C|234
8CVK|1|2A|U|235
*
8CVK|1|2A|A|262
8CVK|1|2A|C|263
8CVK|1|2A|C|264
8CVK|1|2A|A|265
8CVK|1|2A|G|266
*
8CVK|1|2A|C|426
8CVK|1|2A|U|427
8CVK|1|2A|A|428
8CVK|1|2A|A|429
8CVK|1|2A|G|430
8CVK|1|2A|U|431
8CVK|1|2A|A|432
8CVK|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34