J6_8CVL_003

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8CVL|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVL|1|2A|G|44
8CVL|1|2A|C|45
*
8CVL|1|2A|G|179
8CVL|1|2A|G|180
8CVL|1|2A|A|181
8CVL|1|2A|A|182
8CVL|1|2A|C|183
*
8CVL|1|2A|G|214
8CVL|1|2A|G|215
8CVL|1|2A|A|216
8CVL|1|2A|G|217
8CVL|1|2A|A|218
8CVL|1|2A|G|219
8CVL|1|2A|G|220
8CVL|1|2A|A|221
8CVL|1|2A|A|222
8CVL|1|2A|A|223
8CVL|1|2A|G|224
*
8CVL|1|2A|C|231
8CVL|1|2A|G|232
8CVL|1|2A|A|233
8CVL|1|2A|C|234
8CVL|1|2A|U|235
*
8CVL|1|2A|A|262
8CVL|1|2A|C|263
8CVL|1|2A|C|264
8CVL|1|2A|A|265
8CVL|1|2A|G|266
*
8CVL|1|2A|C|426
8CVL|1|2A|U|427
8CVL|1|2A|A|428
8CVL|1|2A|A|429
8CVL|1|2A|G|430
8CVL|1|2A|U|431
8CVL|1|2A|A|432
8CVL|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34