3D structure

PDB id
8E30 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3142
Experimental method
ELECTRON MICROSCOPY
Resolution
1.91 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
8E30|1|I|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8E30|1|I|G|45
8E30|1|I|G|46
*
8E30|1|I|C|179
8E30|1|I|G|180
8E30|1|I|A|181
8E30|1|I|A|182
8E30|1|I|C|183
*
8E30|1|I|G|214
8E30|1|I|G|215
8E30|1|I|A|216
8E30|1|I|A|217
8E30|1|I|A|218
8E30|1|I|A|219
8E30|1|I|G|220
8E30|1|I|A|221
8E30|1|I|A|222
8E30|1|I|A|223
8E30|1|I|U|224
*
8E30|1|I|A|231
8E30|1|I|G|232
8E30|1|I|A|233
8E30|1|I|U|234
8E30|1|I|U|235
*
8E30|1|I|A|262
8E30|1|I|G|263
8E30|1|I|C|264
8E30|1|I|A|265
8E30|1|I|G|266
*
8E30|1|I|C|426
8E30|1|I|U|427
8E30|1|I|A|428
8E30|1|I|A|429
8E30|1|I|A|430
8E30|1|I|U|431
8E30|1|I|A|432
8E30|1|I|C|433

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain R
50S ribosomal protein L34

Coloring options:

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