3D structure

PDB id
8E30 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3142
Experimental method
ELECTRON MICROSCOPY
Resolution
1.91 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
8E30|1|I|U|2076, 8E30|1|I|A|2388, 8E30|1|I|U|2390, 8E30|1|I|G|2428, 8E30|1|I|A|2430, 8E30|1|I|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8E30|1|I|U|2074
8E30|1|I|U|2075
8E30|1|I|U|2076
8E30|1|I|A|2077
*
8E30|1|I|U|2243
8E30|1|I|U|2244
8E30|1|I|U|2245
8E30|1|I|G|2246
*
8E30|1|I|C|2258
8E30|1|I|U|2259
*
8E30|1|I|A|2281
8E30|1|I|G|2282
8E30|1|I|C|2283
8E30|1|I|A|2284
*
8E30|1|I|U|2384
8E30|1|I|C|2385
8E30|1|I|A|2386
8E30|1|I|U|2387
8E30|1|I|A|2388
8E30|1|I|G|2389
8E30|1|I|U|2390
8E30|1|I|G|2391
8E30|1|I|A|2392
8E30|1|I|U|2393
8E30|1|I|C|2394
8E30|1|I|C|2395
*
8E30|1|I|G|2421
8E30|1|I|C|2422
8E30|1|I|U|2423
8E30|1|I|C|2424
8E30|1|I|A|2425
8E30|1|I|A|2426
8E30|1|I|C|2427
8E30|1|I|G|2428
8E30|1|I|G|2429
8E30|1|I|A|2430
8E30|1|I|U|2431
8E30|1|I|A|2432
8E30|1|I|A|2433
8E30|1|I|A|2434
8E30|1|I|A|2435

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L2
Chain L
50S ribosomal protein L15

Coloring options:

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