J6_8E32_001

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

8E32|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E32|1|I|G|45
8E32|1|I|G|46
*
8E32|1|I|C|179
8E32|1|I|G|180
8E32|1|I|A|181
8E32|1|I|A|182
8E32|1|I|C|183
*
8E32|1|I|G|214
8E32|1|I|G|215
8E32|1|I|A|216
8E32|1|I|A|217
8E32|1|I|A|218
8E32|1|I|A|219
8E32|1|I|G|220
8E32|1|I|A|221
8E32|1|I|A|222
8E32|1|I|A|223
8E32|1|I|U|224
8E32|1|I|C|225
*
8E32|1|I|G|230
8E32|1|I|A|231
8E32|1|I|G|232
8E32|1|I|A|233
8E32|1|I|U|234
8E32|1|I|U|235
*
8E32|1|I|A|262
8E32|1|I|G|263
8E32|1|I|C|264
8E32|1|I|A|265
8E32|1|I|G|266
*
8E32|1|I|C|426
8E32|1|I|U|427
8E32|1|I|A|428
8E32|1|I|A|429
8E32|1|I|A|430
8E32|1|I|U|431
8E32|1|I|A|432
8E32|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34