J6_8E32_002

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

8E32|1|I|U|2076, 8E32|1|I|A|2388, 8E32|1|I|U|2390, 8E32|1|I|G|2428, 8E32|1|I|A|2430, 8E32|1|I|U|2431, 8E32|1|I|A|2434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E32|1|I|U|2074
8E32|1|I|U|2075
8E32|1|I|U|2076
8E32|1|I|A|2077
*
8E32|1|I|U|2243
8E32|1|I|U|2244
8E32|1|I|U|2245
8E32|1|I|G|2246
*
8E32|1|I|C|2258
8E32|1|I|U|2259
*
8E32|1|I|A|2281
8E32|1|I|G|2282
8E32|1|I|C|2283
8E32|1|I|A|2284
*
8E32|1|I|U|2384
8E32|1|I|C|2385
8E32|1|I|A|2386
8E32|1|I|U|2387
8E32|1|I|A|2388
8E32|1|I|G|2389
8E32|1|I|U|2390
8E32|1|I|G|2391
8E32|1|I|A|2392
8E32|1|I|U|2393
8E32|1|I|C|2394
8E32|1|I|C|2395
*
8E32|1|I|G|2421
8E32|1|I|C|2422
8E32|1|I|U|2423
8E32|1|I|C|2424
8E32|1|I|A|2425
8E32|1|I|A|2426
8E32|1|I|C|2427
8E32|1|I|G|2428
8E32|1|I|G|2429
8E32|1|I|A|2430
8E32|1|I|U|2431
8E32|1|I|A|2432
8E32|1|I|A|2433
8E32|1|I|A|2434
8E32|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15