J6_8E33_001

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E33|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E33|1|I|G|45
8E33|1|I|G|46
*
8E33|1|I|C|179
8E33|1|I|G|180
8E33|1|I|A|181
8E33|1|I|A|182
8E33|1|I|C|183
*
8E33|1|I|G|214
8E33|1|I|G|215
8E33|1|I|A|216
8E33|1|I|A|217
8E33|1|I|A|218
8E33|1|I|A|219
8E33|1|I|G|220
8E33|1|I|A|221
8E33|1|I|A|222
8E33|1|I|A|223
8E33|1|I|U|224
*
8E33|1|I|A|231
8E33|1|I|G|232
8E33|1|I|A|233
8E33|1|I|U|234
8E33|1|I|U|235
*
8E33|1|I|A|262
8E33|1|I|G|263
8E33|1|I|C|264
8E33|1|I|A|265
8E33|1|I|G|266
*
8E33|1|I|C|426
8E33|1|I|U|427
8E33|1|I|A|428
8E33|1|I|A|429
8E33|1|I|A|430
8E33|1|I|U|431
8E33|1|I|A|432
8E33|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34