J6_8E35_001

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

8E35|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E35|1|I|G|45
8E35|1|I|G|46
*
8E35|1|I|C|179
8E35|1|I|G|180
8E35|1|I|A|181
8E35|1|I|A|182
8E35|1|I|C|183
*
8E35|1|I|G|214
8E35|1|I|G|215
8E35|1|I|A|216
8E35|1|I|A|217
8E35|1|I|A|218
8E35|1|I|A|219
8E35|1|I|G|220
8E35|1|I|A|221
8E35|1|I|A|222
8E35|1|I|A|223
8E35|1|I|U|224
8E35|1|I|C|225
*
8E35|1|I|G|230
8E35|1|I|A|231
8E35|1|I|G|232
8E35|1|I|A|233
8E35|1|I|U|234
8E35|1|I|U|235
*
8E35|1|I|A|262
8E35|1|I|G|263
8E35|1|I|C|264
8E35|1|I|A|265
8E35|1|I|G|266
*
8E35|1|I|C|426
8E35|1|I|U|427
8E35|1|I|A|428
8E35|1|I|A|429
8E35|1|I|A|430
8E35|1|I|U|431
8E35|1|I|A|432
8E35|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34