J6_8E36_002

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

8E36|1|I|U|2076, 8E36|1|I|A|2388, 8E36|1|I|U|2390, 8E36|1|I|G|2428, 8E36|1|I|A|2430, 8E36|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E36|1|I|U|2074
8E36|1|I|U|2075
8E36|1|I|U|2076
8E36|1|I|A|2077
*
8E36|1|I|U|2243
8E36|1|I|U|2244
8E36|1|I|U|2245
8E36|1|I|G|2246
*
8E36|1|I|C|2258
8E36|1|I|U|2259
*
8E36|1|I|A|2281
8E36|1|I|G|2282
8E36|1|I|C|2283
8E36|1|I|A|2284
*
8E36|1|I|U|2384
8E36|1|I|C|2385
8E36|1|I|A|2386
8E36|1|I|U|2387
8E36|1|I|A|2388
8E36|1|I|G|2389
8E36|1|I|U|2390
8E36|1|I|G|2391
8E36|1|I|A|2392
8E36|1|I|U|2393
8E36|1|I|C|2394
8E36|1|I|C|2395
*
8E36|1|I|G|2421
8E36|1|I|C|2422
8E36|1|I|U|2423
8E36|1|I|C|2424
8E36|1|I|A|2425
8E36|1|I|A|2426
8E36|1|I|C|2427
8E36|1|I|G|2428
8E36|1|I|G|2429
8E36|1|I|A|2430
8E36|1|I|U|2431
8E36|1|I|A|2432
8E36|1|I|A|2433
8E36|1|I|A|2434
8E36|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15