J6_8E3O_001

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E3O|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E3O|1|I|G|45
8E3O|1|I|G|46
*
8E3O|1|I|C|179
8E3O|1|I|G|180
8E3O|1|I|A|181
8E3O|1|I|A|182
8E3O|1|I|C|183
*
8E3O|1|I|G|214
8E3O|1|I|G|215
8E3O|1|I|A|216
8E3O|1|I|A|217
8E3O|1|I|A|218
8E3O|1|I|A|219
8E3O|1|I|G|220
8E3O|1|I|A|221
8E3O|1|I|A|222
8E3O|1|I|A|223
8E3O|1|I|U|224
*
8E3O|1|I|A|231
8E3O|1|I|G|232
8E3O|1|I|A|233
8E3O|1|I|U|234
8E3O|1|I|U|235
*
8E3O|1|I|A|262
8E3O|1|I|G|263
8E3O|1|I|C|264
8E3O|1|I|A|265
8E3O|1|I|G|266
*
8E3O|1|I|C|426
8E3O|1|I|U|427
8E3O|1|I|A|428
8E3O|1|I|A|429
8E3O|1|I|A|430
8E3O|1|I|U|431
8E3O|1|I|A|432
8E3O|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34