J6_8E41_001

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E41|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E41|1|I|G|45
8E41|1|I|G|46
*
8E41|1|I|C|179
8E41|1|I|G|180
8E41|1|I|A|181
8E41|1|I|A|182
8E41|1|I|C|183
*
8E41|1|I|G|214
8E41|1|I|G|215
8E41|1|I|A|216
8E41|1|I|A|217
8E41|1|I|A|218
8E41|1|I|A|219
8E41|1|I|G|220
8E41|1|I|A|221
8E41|1|I|A|222
8E41|1|I|A|223
8E41|1|I|U|224
*
8E41|1|I|A|231
8E41|1|I|G|232
8E41|1|I|A|233
8E41|1|I|U|234
8E41|1|I|U|235
*
8E41|1|I|A|262
8E41|1|I|G|263
8E41|1|I|C|264
8E41|1|I|A|265
8E41|1|I|G|266
*
8E41|1|I|C|426
8E41|1|I|U|427
8E41|1|I|A|428
8E41|1|I|A|429
8E41|1|I|A|430
8E41|1|I|U|431
8E41|1|I|A|432
8E41|1|I|C|433

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34