J6_8E41_002

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

8E41|1|I|U|2076, 8E41|1|I|A|2388, 8E41|1|I|U|2390, 8E41|1|I|G|2428, 8E41|1|I|A|2430, 8E41|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E41|1|I|U|2074
8E41|1|I|U|2075
8E41|1|I|U|2076
8E41|1|I|A|2077
*
8E41|1|I|U|2243
8E41|1|I|U|2244
8E41|1|I|U|2245
8E41|1|I|G|2246
*
8E41|1|I|C|2258
8E41|1|I|U|2259
*
8E41|1|I|A|2281
8E41|1|I|G|2282
8E41|1|I|C|2283
8E41|1|I|A|2284
*
8E41|1|I|U|2384
8E41|1|I|C|2385
8E41|1|I|A|2386
8E41|1|I|U|2387
8E41|1|I|A|2388
8E41|1|I|G|2389
8E41|1|I|U|2390
8E41|1|I|G|2391
8E41|1|I|A|2392
8E41|1|I|U|2393
8E41|1|I|C|2394
8E41|1|I|C|2395
*
8E41|1|I|G|2421
8E41|1|I|C|2422
8E41|1|I|U|2423
8E41|1|I|C|2424
8E41|1|I|A|2425
8E41|1|I|A|2426
8E41|1|I|C|2427
8E41|1|I|G|2428
8E41|1|I|G|2429
8E41|1|I|A|2430
8E41|1|I|U|2431
8E41|1|I|A|2432
8E41|1|I|A|2433
8E41|1|I|A|2434
8E41|1|I|A|2435

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15