J6_8E42_001

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E42|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E42|1|I|G|45
8E42|1|I|G|46
*
8E42|1|I|C|179
8E42|1|I|G|180
8E42|1|I|A|181
8E42|1|I|A|182
8E42|1|I|C|183
*
8E42|1|I|G|214
8E42|1|I|G|215
8E42|1|I|A|216
8E42|1|I|A|217
8E42|1|I|A|218
8E42|1|I|A|219
8E42|1|I|G|220
8E42|1|I|A|221
8E42|1|I|A|222
8E42|1|I|A|223
8E42|1|I|U|224
*
8E42|1|I|A|231
8E42|1|I|G|232
8E42|1|I|A|233
8E42|1|I|U|234
8E42|1|I|U|235
*
8E42|1|I|A|262
8E42|1|I|G|263
8E42|1|I|C|264
8E42|1|I|A|265
8E42|1|I|G|266
*
8E42|1|I|C|426
8E42|1|I|U|427
8E42|1|I|A|428
8E42|1|I|A|429
8E42|1|I|A|430
8E42|1|I|U|431
8E42|1|I|A|432
8E42|1|I|C|433

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34