J6_8E43_001

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E43|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E43|1|I|G|45
8E43|1|I|G|46
*
8E43|1|I|C|179
8E43|1|I|G|180
8E43|1|I|A|181
8E43|1|I|A|182
8E43|1|I|C|183
*
8E43|1|I|G|214
8E43|1|I|G|215
8E43|1|I|A|216
8E43|1|I|A|217
8E43|1|I|A|218
8E43|1|I|A|219
8E43|1|I|G|220
8E43|1|I|A|221
8E43|1|I|A|222
8E43|1|I|A|223
8E43|1|I|U|224
*
8E43|1|I|A|231
8E43|1|I|G|232
8E43|1|I|A|233
8E43|1|I|U|234
8E43|1|I|U|235
*
8E43|1|I|A|262
8E43|1|I|G|263
8E43|1|I|C|264
8E43|1|I|A|265
8E43|1|I|G|266
*
8E43|1|I|C|426
8E43|1|I|U|427
8E43|1|I|A|428
8E43|1|I|A|429
8E43|1|I|A|430
8E43|1|I|U|431
8E43|1|I|A|432
8E43|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34