J6_8E44_001

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E44|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E44|1|I|G|45
8E44|1|I|G|46
*
8E44|1|I|C|179
8E44|1|I|G|180
8E44|1|I|A|181
8E44|1|I|A|182
8E44|1|I|C|183
*
8E44|1|I|G|214
8E44|1|I|G|215
8E44|1|I|A|216
8E44|1|I|A|217
8E44|1|I|A|218
8E44|1|I|A|219
8E44|1|I|G|220
8E44|1|I|A|221
8E44|1|I|A|222
8E44|1|I|A|223
8E44|1|I|U|224
*
8E44|1|I|A|231
8E44|1|I|G|232
8E44|1|I|A|233
8E44|1|I|U|234
8E44|1|I|U|235
*
8E44|1|I|A|262
8E44|1|I|G|263
8E44|1|I|C|264
8E44|1|I|A|265
8E44|1|I|G|266
*
8E44|1|I|C|426
8E44|1|I|U|427
8E44|1|I|A|428
8E44|1|I|A|429
8E44|1|I|A|430
8E44|1|I|U|431
8E44|1|I|A|432
8E44|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34