J6_8E46_001

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8E46|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E46|1|I|G|45
8E46|1|I|G|46
*
8E46|1|I|C|179
8E46|1|I|G|180
8E46|1|I|A|181
8E46|1|I|A|182
8E46|1|I|C|183
*
8E46|1|I|G|214
8E46|1|I|G|215
8E46|1|I|A|216
8E46|1|I|A|217
8E46|1|I|A|218
8E46|1|I|A|219
8E46|1|I|G|220
8E46|1|I|A|221
8E46|1|I|A|222
8E46|1|I|A|223
8E46|1|I|U|224
*
8E46|1|I|A|231
8E46|1|I|G|232
8E46|1|I|A|233
8E46|1|I|U|234
8E46|1|I|U|235
*
8E46|1|I|A|262
8E46|1|I|G|263
8E46|1|I|C|264
8E46|1|I|A|265
8E46|1|I|G|266
*
8E46|1|I|C|426
8E46|1|I|U|427
8E46|1|I|A|428
8E46|1|I|A|429
8E46|1|I|A|430
8E46|1|I|U|431
8E46|1|I|A|432
8E46|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34