J6_8E47_001

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

41 nucleotides

Bulged bases

8E47|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E47|1|I|G|45
8E47|1|I|G|46
*
8E47|1|I|C|179
8E47|1|I|G|180
8E47|1|I|A|181
8E47|1|I|A|182
8E47|1|I|C|183
8E47|1|I|C|184
*
8E47|1|I|G|212
8E47|1|I|A|213
8E47|1|I|G|214
8E47|1|I|G|215
8E47|1|I|A|216
8E47|1|I|A|217
8E47|1|I|A|218
8E47|1|I|A|219
8E47|1|I|G|220
8E47|1|I|A|221
8E47|1|I|A|222
8E47|1|I|A|223
8E47|1|I|U|224
8E47|1|I|C|225
*
8E47|1|I|G|230
8E47|1|I|A|231
8E47|1|I|G|232
8E47|1|I|A|233
8E47|1|I|U|234
8E47|1|I|U|235
*
8E47|1|I|A|262
8E47|1|I|G|263
8E47|1|I|C|264
8E47|1|I|A|265
8E47|1|I|G|266
*
8E47|1|I|C|426
8E47|1|I|U|427
8E47|1|I|A|428
8E47|1|I|A|429
8E47|1|I|A|430
8E47|1|I|U|431
8E47|1|I|A|432
8E47|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34