J6_8E48_001

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

8E48|1|I|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E48|1|I|G|45
8E48|1|I|G|46
*
8E48|1|I|C|179
8E48|1|I|G|180
8E48|1|I|A|181
8E48|1|I|A|182
8E48|1|I|C|183
*
8E48|1|I|G|214
8E48|1|I|G|215
8E48|1|I|A|216
8E48|1|I|A|217
8E48|1|I|A|218
8E48|1|I|A|219
8E48|1|I|G|220
8E48|1|I|A|221
8E48|1|I|A|222
8E48|1|I|A|223
8E48|1|I|U|224
8E48|1|I|C|225
*
8E48|1|I|G|230
8E48|1|I|A|231
8E48|1|I|G|232
8E48|1|I|A|233
8E48|1|I|U|234
8E48|1|I|U|235
*
8E48|1|I|A|262
8E48|1|I|G|263
8E48|1|I|C|264
8E48|1|I|A|265
8E48|1|I|G|266
*
8E48|1|I|C|426
8E48|1|I|U|427
8E48|1|I|A|428
8E48|1|I|A|429
8E48|1|I|A|430
8E48|1|I|U|431
8E48|1|I|A|432
8E48|1|I|C|433

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L34