3D structure

PDB id
8EIU (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
Length
36 nucleotides
Bulged bases
8EIU|1|a|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EIU|1|a|G|45
8EIU|1|a|G|46
*
8EIU|1|a|C|179
8EIU|1|a|G|180
8EIU|1|a|A|181
8EIU|1|a|A|182
8EIU|1|a|C|183
*
8EIU|1|a|G|214
8EIU|1|a|G|215
8EIU|1|a|A|216
8EIU|1|a|A|217
8EIU|1|a|A|218
8EIU|1|a|A|219
8EIU|1|a|G|220
8EIU|1|a|A|221
8EIU|1|a|A|222
8EIU|1|a|A|223
8EIU|1|a|U|224
*
8EIU|1|a|A|231
8EIU|1|a|G|232
8EIU|1|a|A|233
8EIU|1|a|U|234
8EIU|1|a|U|235
*
8EIU|1|a|A|262
8EIU|1|a|G|263
8EIU|1|a|C|264
8EIU|1|a|A|265
8EIU|1|a|G|266
*
8EIU|1|a|C|426
8EIU|1|a|U|427
8EIU|1|a|A|428
8EIU|1|a|A|429
8EIU|1|a|A|430
8EIU|1|a|U|431
8EIU|1|a|A|432
8EIU|1|a|C|433

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1886 s