J6_8EKB_002
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8EKB|1|1A|U|2076, 8EKB|1|1A|A|2388, 8EKB|1|1A|U|2390, 8EKB|1|1A|G|2428, 8EKB|1|1A|A|2430, 8EKB|1|1A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EKB|1|1A|U|2074
8EKB|1|1A|U|2075
8EKB|1|1A|U|2076
8EKB|1|1A|A|2077
*
8EKB|1|1A|U|2243
8EKB|1|1A|U|2244
8EKB|1|1A|U|2245
8EKB|1|1A|G|2246
*
8EKB|1|1A|C|2258
8EKB|1|1A|G|2259
*
8EKB|1|1A|C|2281
8EKB|1|1A|G|2282
8EKB|1|1A|C|2283
8EKB|1|1A|C|2284
*
8EKB|1|1A|G|2384
8EKB|1|1A|C|2385
8EKB|1|1A|C|2386
8EKB|1|1A|U|2387
8EKB|1|1A|A|2388
8EKB|1|1A|G|2389
8EKB|1|1A|U|2390
8EKB|1|1A|G|2391
8EKB|1|1A|A|2392
8EKB|1|1A|A|2393
8EKB|1|1A|C|2394
8EKB|1|1A|C|2395
*
8EKB|1|1A|G|2421
8EKB|1|1A|A|2422
8EKB|1|1A|U|2423
8EKB|1|1A|C|2424
8EKB|1|1A|A|2425
8EKB|1|1A|A|2426
8EKB|1|1A|C|2427
8EKB|1|1A|G|2428
8EKB|1|1A|G|2429
8EKB|1|1A|A|2430
8EKB|1|1A|U|2431
8EKB|1|1A|A|2432
8EKB|1|1A|A|2433
8EKB|1|1A|A|2434
8EKB|1|1A|A|2435
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
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