J6_8EKB_003

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

8EKB|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKB|1|2A|G|44
8EKB|1|2A|C|45
*
8EKB|1|2A|G|179
8EKB|1|2A|G|180
8EKB|1|2A|A|181
8EKB|1|2A|A|182
8EKB|1|2A|C|183
*
8EKB|1|2A|G|214
8EKB|1|2A|G|215
8EKB|1|2A|A|216
8EKB|1|2A|G|217
8EKB|1|2A|A|218
8EKB|1|2A|G|219
8EKB|1|2A|G|220
8EKB|1|2A|A|221
8EKB|1|2A|A|222
8EKB|1|2A|A|223
8EKB|1|2A|G|224
*
8EKB|1|2A|C|231
8EKB|1|2A|G|232
8EKB|1|2A|A|233
8EKB|1|2A|C|234
8EKB|1|2A|U|235
*
8EKB|1|2A|A|262
8EKB|1|2A|C|263
8EKB|1|2A|C|264
8EKB|1|2A|A|265
8EKB|1|2A|G|266
*
8EKB|1|2A|C|426
8EKB|1|2A|U|427
8EKB|1|2A|A|428
8EKB|1|2A|A|429
8EKB|1|2A|G|430
8EKB|1|2A|U|431
8EKB|1|2A|A|432
8EKB|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34