J6_8EKC_001

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8EKC|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKC|1|A|G|45
8EKC|1|A|G|46
*
8EKC|1|A|C|179
8EKC|1|A|G|180
8EKC|1|A|A|181
8EKC|1|A|A|182
8EKC|1|A|C|183
*
8EKC|1|A|G|214
8EKC|1|A|G|215
8EKC|1|A|A|216
8EKC|1|A|A|217
8EKC|1|A|A|218
8EKC|1|A|A|219
8EKC|1|A|G|220
8EKC|1|A|A|221
8EKC|1|A|A|222
8EKC|1|A|A|223
8EKC|1|A|U|224
*
8EKC|1|A|A|231
8EKC|1|A|G|232
8EKC|1|A|A|233
8EKC|1|A|U|234
8EKC|1|A|U|235
*
8EKC|1|A|A|262
8EKC|1|A|G|263
8EKC|1|A|C|264
8EKC|1|A|A|265
8EKC|1|A|G|266
*
8EKC|1|A|C|426
8EKC|1|A|U|427
8EKC|1|A|A|428
8EKC|1|A|A|429
8EKC|1|A|A|430
8EKC|1|A|U|431
8EKC|1|A|A|432
8EKC|1|A|C|433

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34