J6_8EMM_001

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8EMM|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EMM|1|a|G|45
8EMM|1|a|G|46
*
8EMM|1|a|C|179
8EMM|1|a|G|180
8EMM|1|a|A|181
8EMM|1|a|A|182
8EMM|1|a|C|183
*
8EMM|1|a|G|214
8EMM|1|a|G|215
8EMM|1|a|A|216
8EMM|1|a|A|217
8EMM|1|a|A|218
8EMM|1|a|A|219
8EMM|1|a|G|220
8EMM|1|a|A|221
8EMM|1|a|A|222
8EMM|1|a|A|223
8EMM|1|a|U|224
*
8EMM|1|a|A|231
8EMM|1|a|G|232
8EMM|1|a|A|233
8EMM|1|a|U|234
8EMM|1|a|U|235
*
8EMM|1|a|A|262
8EMM|1|a|G|263
8EMM|1|a|C|264
8EMM|1|a|A|265
8EMM|1|a|G|266
*
8EMM|1|a|C|426
8EMM|1|a|U|427
8EMM|1|a|A|428
8EMM|1|a|A|429
8EMM|1|a|A|430
8EMM|1|a|U|431
8EMM|1|a|A|432
8EMM|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34