J6_8EV6_002
3D structure
- PDB id
- 8EV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.946 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8EV6|1|1A|U|2098, 8EV6|1|1A|A|2400, 8EV6|1|1A|U|2402, 8EV6|1|1A|G|2440, 8EV6|1|1A|A|2442, 8EV6|1|1A|U|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EV6|1|1A|U|2096
8EV6|1|1A|U|2097
8EV6|1|1A|U|2098
8EV6|1|1A|A|2099
*
8EV6|1|1A|U|2255
8EV6|1|1A|U|2256
8EV6|1|1A|U|2257
8EV6|1|1A|G|2258
*
8EV6|1|1A|C|2270
8EV6|1|1A|G|2271
*
8EV6|1|1A|C|2293
8EV6|1|1A|G|2294
8EV6|1|1A|C|2295
8EV6|1|1A|C|2296
*
8EV6|1|1A|G|2396
8EV6|1|1A|C|2397
8EV6|1|1A|C|2398
8EV6|1|1A|U|2399
8EV6|1|1A|A|2400
8EV6|1|1A|G|2401
8EV6|1|1A|U|2402
8EV6|1|1A|G|2403
8EV6|1|1A|A|2404
8EV6|1|1A|A|2405
8EV6|1|1A|C|2406
8EV6|1|1A|C|2407
*
8EV6|1|1A|G|2433
8EV6|1|1A|A|2434
8EV6|1|1A|U|2435
8EV6|1|1A|C|2436
8EV6|1|1A|A|2437
8EV6|1|1A|A|2438
8EV6|1|1A|C|2439
8EV6|1|1A|G|2440
8EV6|1|1A|G|2441
8EV6|1|1A|A|2442
8EV6|1|1A|U|2443
8EV6|1|1A|A|2444
8EV6|1|1A|A|2445
8EV6|1|1A|A|2446
8EV6|1|1A|A|2447
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
- Chain 1y
- Transfer RNA; tRNA
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